Gene detail

Detailed information of OS493_019749-T1 in Lophelia pertusa

Genomic Location: scaffold_70:674523...676592
NR annotation: KAJ7372305.1, hypothetical protein OS493_019749 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007074 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_019749-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040111 all species →	Family	Outer dynein arm-docking complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23040 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019749-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019749-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

91TPM > 0

7Conditions

14.1Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	3.05	8.33
polyp at pH7 6	18	12	2.29	5.25
coral polyp · control treatment	16	16	3.74	11.16
coral polyp · oil and dispersant treatment	16	13	3.34	9.39
coral polyp · oil treatment	16	15	5.12	14.10
coral polyp · dispersant treatment	16	15	2.92	5.32
Polyp	10	7	2.15	8.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.08
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.