Gene detail

Detailed information of OS493_019757-T1 in Lophelia pertusa

Genomic Location: scaffold_70:715019...733192
NR annotation: KAJ7372313.1, hypothetical protein OS493_019757 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BS35	Alkylglycerol monooxygenase OS=Mus musculus OX=10090 GN=Agmo PE=1 SV=1
A0JPQ8	Alkylglycerol monooxygenase OS=Rattus norvegicus OX=10116 GN=Agmo PE=2 SV=1
Q6ZNB7	Alkylglycerol monooxygenase OS=Homo sapiens OX=9606 GN=AGMO PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002866 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04116 all species →	FA_hydroxylase	Fatty acid hydroxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051689 all species →	Family	Sterol Desaturase/TMEM195-like	Interproscan
IPR006694 all species →	Domain	Fatty acid hydroxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21624 all species →	STEROL DESATURASE-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006643 all species →	Biological Process	membrane lipid metabolic process	Interproscan
GO:0050479 all species →	Molecular Function	glyceryl-ether monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15537	AGMO; alkylglycerol monooxygenase	EC:1.14.16.5	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019757-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

33.3Max TPM

11.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.40	13.10
polyp at pH7 6	18	17	10.22	14.58
coral polyp · control treatment	16	16	14.98	33.35
coral polyp · oil and dispersant treatment	16	16	11.37	21.19
coral polyp · oil treatment	16	16	13.86	24.73
coral polyp · dispersant treatment	16	16	10.72	22.84
Polyp	10	10	15.77	27.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.