Detailed information of OS493_019900-T1 in Lophelia pertusa

Genomic Location: scaffold_71:918345...930388
NR annotation: KAJ7358993.1, Transducin (beta)-like 3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5U2W5Transducin beta-like protein 3 OS=Rattus norvegicus OX=10116 GN=Tbl3 PE=2 SV=1
Q8C4J7Transducin beta-like protein 3 OS=Mus musculus OX=10090 GN=Tbl3 PE=2 SV=1
Q2KJJ5Transducin beta-like protein 3 OS=Bos taurus OX=9913 GN=TBL3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003861 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF00327
all species →		Ribosomal_L30Ribosomal protein L30p/L7eDomainInterproscan
PF08079
all species →		Ribosomal_L30_NRibosomal L30 N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR035808
all species →		DomainLarge ribosomal subunit protein uL30, eukaryotic/archaealInterproscan
IPR018038
all species →		Conserved_siteLarge ribosomal subunit protein uL30, conserved siteInterproscan
IPR036919
all species →		Homologous_superfamilyLarge ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR016082
all species →		DomainLarge ribosomal subunit protein uL30-like, ferredoxin-like fold domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR012988
all species →		DomainLarge ribosomal subunit protein uL30, N-terminal, eukaryotesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19854
all species →		TRANSDUCIN BETA-LIKE 3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000472
all species →		Biological Processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000480
all species →		Biological Processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030686
all species →		Cellular Component90S preribosomeInterproscan
GO:0034511
all species →		Molecular FunctionU3 snoRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_019900-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_019900-T1 global co-expression network
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