Gene detail

Detailed information of OS493_019988-T1 in Lophelia pertusa

Genomic Location: scaffold_72:117134...117610
NR annotation: KAJ7331207.1, hypothetical protein OS493_019988 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P410	S-adenosylmethionine sensor upstream of mTORC1 OS=Danio rerio OX=7955 GN=samtor PE=2 SV=1
Q66J91	S-adenosylmethionine sensor upstream of mTORC1 OS=Xenopus laevis OX=8355 GN=samtor PE=2 SV=1
Q1RMZ1	S-adenosylmethionine sensor upstream of mTORC1 OS=Homo sapiens OX=9606 GN=SAMTOR PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007484 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11968 all species →	Bmt2	25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021867 all species →	Family	S-adenosylmethionine-dependent methyltransferase Bmt2-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21008 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_019988-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019988-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

13.2Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.99	7.45
polyp at pH7 6	18	18	2.62	13.19
coral polyp · control treatment	16	16	1.53	5.09
coral polyp · oil and dispersant treatment	16	16	0.88	2.41
coral polyp · oil treatment	16	16	1.45	5.08
coral polyp · dispersant treatment	16	13	0.61	1.48
Polyp	10	9	4.91	12.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.06
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.