Gene detail

Detailed information of OS493_019997-T1 in Lophelia pertusa

Genomic Location: scaffold_72:197793...203610
NR annotation: KAJ7331215.1, hypothetical protein OS493_019997 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P410	S-adenosylmethionine sensor upstream of mTORC1 OS=Danio rerio OX=7955 GN=samtor PE=2 SV=1
Q1RMZ1	S-adenosylmethionine sensor upstream of mTORC1 OS=Homo sapiens OX=9606 GN=SAMTOR PE=1 SV=1
Q66J91	S-adenosylmethionine sensor upstream of mTORC1 OS=Xenopus laevis OX=8355 GN=samtor PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007665 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11968 all species →	Bmt2	25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021867 all species →	Family	S-adenosylmethionine-dependent methyltransferase Bmt2-like	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21008 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18849	BMT2; 25S rRNA (adenine2142-N1)-methyltransferase	EC:2.1.1.286	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_019997-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

10.0Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.23	5.91
polyp at pH7 6	18	16	1.61	2.98
coral polyp · control treatment	16	16	2.75	5.27
coral polyp · oil and dispersant treatment	16	16	2.03	9.99
coral polyp · oil treatment	16	16	2.42	3.56
coral polyp · dispersant treatment	16	16	1.00	1.99
Polyp	10	9	3.14	7.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.