Gene detail

Detailed information of OS493_020020-T1 in Lophelia pertusa

Genomic Location: scaffold_72:592865...604052
NR annotation: KAJ7331238.1, hypothetical protein OS493_020020 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_020020-T1

ATGGCATACAGAAGTTGCCTCACTCTCTTCTGCAATCACTGCAATACTGCATTAGCCACGTCTGACATCTTAATGTTAGCCACGATTCCTCCAACACAGTCACACTTGGCCATTAAAAAAGACCAGGAAGACAAAGCTTACGAGAAAATCCGCAAAATTCCCAATCCGGACCCTAAGAAAGCTTCGTTTTGTCCTTACAAAATTCTTTGCAAACAGTGCAATGATTACCCGGTGGGAACCATCAGCCTTATCGAAGGTAATACGCTCATATGTTTCAAGATCGAAAACGTGCACTTTAAACGGGGATATGAAGAAATCAAAGGAAAAAGGCTGAAGCAAATTAAAGACAAGCTCTTGCAATATGGTTTAGAAGTAGTGAATGTTTCTCAACTGAGAGAGGCGTTTTCACGAGCTGTCAATGTGACGCACACTCCCGCAGAGCCTATGGTATATTGCGATCTAGACAAACTTACCATGGAGGACATTCTGTCTTTCACAAAACAGGTACCACGCGGTTATCAACGAGAGCTCTTTCTTCAAGCCTTACGCGGAAACACGCTGGTGTACCTGCCCACGGGCTCAGGTAAGACCTTGATCGCTGCTATGGTGCTGAGTTGTATGAAGAAATTGAACCCAAATAAACTGATGGTGTTTCTGGTCGATCGTATACCGCTTGTATACCAACAGAGTGACTACATCAAGTCCCAGGTCCCGGATCTAAGAGTGGAGATCTTAGCGGGAGATGTTGGGCGTTTCCCGGGCGACAAATCTCGTTGGATAGCCACTGTTCAGGCGCTAACGGAAAATAAAATCGATCTTCTTGTTATGACGCACCAGATTCTGCTAAACTTGATGGCCGATGATTGCCCAGTGTTGCGCATGTCTGATGTATCTGTTCTTGTTTTCGATGAGGCACACCACTGCCTTGGGAATCATTGCTATAATCAAATCATGAGAGATTTCTACAAAGTAACCATTAACAGCCGCAAGCCTCTGGTGCTGGCGCTGACCGCATCTCCTGCGGGCGCAGATACACCGCAAGTCACAACAACTAAGCTGGAAGAGCTACTGTCGAATCTCTGCGCATGTGCGCGCATGCCTTCGCGGTCAACGGATTTGGAGGCGTACTGGAACCGACCGGAAACTACGTACGAAATGGTTTCACTGAATACAAAGCAACAACTTTTACAATCATTTGTTGAGACGTATCTCACATCCTTGACAGTGCAGATCGAAGCAGAATTGAAATGCCCACGTGCGCTTGATAAGCTTCGCGTGCTAACGCCTAACTACCGCGGTGCTTTGCGCAAGCTGATTGAACGTTGCTATGGTGATAAAAACCGAGTAAAAGGCCTGGCACTAGGAGAGCACGCCATGCACATGCTGAGTGTGATTGAGGTGAATAACATTTTGGGAAATGAGTATGCAGTTGACTGCCTTGTAGAGTGCATCAAGCAATTGAGAACGGCTACGTCCCCCATGGAACAGCTCAAAAAGAAGCTCATTGGTTCTTCAGAGCAGCTGAGGGTTCTGGAATCTTCGATCGCAAGTCTTAAGCGAGCTTCAAGCTTGTTCTCGTGCAGCGACAGGTATCAGCACCTAACCAAAGAGCTTCAGAATTTCATCCATCGAGTTGAAAGGGACGAAACCTCCAGGGGAATCATCTTTGTCAAGATGAGGAAGACTGCGTACAAACTCTGCGAGCGGTTAAGGCAAGAACCTGGAATTGCCAAAAGGCTGAACCCAGCCTTCCTCGTCGGACACGGACAGGGAAGCGATGGAATGGACTGGAGAGGAGAGCAGGAGGAAATCCTTAAGAAGTTTAGATCAGGCGAGGTTAAACTGCTTGTCAGCACGAGCGTGTTAGAGGAAGGCCTGGACGTTCCGGTCTGTAACCTGGTCATCCGCTTTGACAGCGCGCTGACTTTGCGGGCACTGGTGCAGAGCCGCGGGCGAGCATCCCGCCGTCCCGACAGCCGTTTCGTGGTGATCTGTAGCGACCCCAAGGAGCAAACGAACGCGTTTGATGCAATCAGAAAGGAGCAGAACATGGAACAAGCTATGAGGCGGCAGCAGTATTCCATAACTCGCTCATTACAGGCGGTGCTATTCGGATGCGAGATGAAGAAACCCGACTTGAGCCAGCCATCACATCCAGTTGAACCTCCAAGCATGACATGCGCGGAACACGAACCGGAACCGGAAGCTGAGGAGGATGATGACATGGAAAATGAATACAGCGTGGAGACGATGACCATACATGACAGGGGAGAGAGCCTAGCGTCTGGAGGACCTAGAAAGAGAAGGAAAAAACATATCCCTAATGTCCGTATCGCTATCCACAATGTTGTCTTGGGAGGAAACAACAGTAAAGAAGTTGGCCAACTAACAGAATATTTTGAGAGATATTTCGAAGTAAAATCATTGCATACAGAAAACGTCGGAGCTGGCGTCCCCGGCGTCGGAGGTGCATCGAGAAAGGATAACACACCCGAGAGAAGCCTTTTTTCTGCCGTTATTCGCCTGCAGCTAGAGCCGCTTGAAGATCAAAGATTCCGCACCAAGGAAACATTCTTCACTCATATTGTCCAGTCCTGGTGTTCTCGTCCCATGGCGCTCCGATCCCAAACAGAGAAACTCTGGTTGCGTCGGGATGAACCTTCACGGAATCGAAACTATTCCAAACCGGTGCTGGTCATCAAACCAGACGCCATGTTTCTGGGGTACTTTTTGAATCAAGCCCACTTCTGTGTCCACTGGCCTTTTAACTCCGCTAAGCTAGAGAACATTCGCGTCGCATTCGAGCACGATCTACGAACAATGCTGATTTGTTTCACCGTGCCAAATCCGTCTAGTCAGTGGAAGGCTGATCTGTACAAGCTCCAGGTTCGCTACAGCGAACTGCAAGAATTCGTGTTGGTGGACAAACGGAGCTCGTCTTCGAGTCACGAAATCTTATTCACACTCACACATCCCCCGCGCATTTTCAAAGCGAAAAATTTCATCAAGAAAGAACAAGACGATGACGAGAATGATTTTGAAGAATGGTACTTCGAGGAGAACGACTACGACTTCGACTACGCTCGTGACTTCGCCGACGAGTTCTCGAGCGATTCCGAAGGCGATGAAGCAACTTCCGAAGTCGGTCGTAACAGTGCCGACAGTTCGGAGAATGCCGACGACGATCGCGAAGCTCTCCTGACGAGTTCGGACGTCGCAAGTATTGATGACGTGGTGAACTGGGAACGAGTGACGGAAATCGAAGATAGCGGAGGAGCTTTTGGTTCCTGTTGGGCGTATAATTTAAAGTTCAAGGCCAGCGCATGGAAAGAGATTAAAGAAGTGCTCAGAAGCATTGCGAAGTACGACAAAAAATCCTTCTATGTTTCCATGCGCAAGTCTTTTAGAAGGTTACCAGAGGTAGACATTCCCAAGGAACTGCCTTTTCGCGTCAAATACGCCGCACAATGTGTCCTGAATTCTTTTCCATTCGTCAAGGGAAGAATCACAGCTAAGTTCGCCACTTTGCTTGGAAGCAAACCTGAACAAGTGACGTTGGTTGCACTGGAAAGGCTCGCTGCGGCTCTCCGGCGGAATTCGTTCTGCGATCCAGAAACCAAACTTGGAACTCTACTTGACGAAATGAATTTTAAAGCAGGTGGAATCCCAAAGCAGCTTCTTCCCACTCAATGCGCCATGATCAAACGCATGGTCATCACACCAACTCGCTTGCTGTTCTACACACCGGAAGTCATGTCGAAAAACCGCGTGCTCAGACAGTACAACACCGATCAATTTCTCTGCGTGAACGTCCGCGATGAAGACTTCTCGAAGATTTCTGCAGCTGGCGGTAGCATCGACCACGTGTTGGAGCGTGTGAAGCGGACTTTGGACAGCGAAGTGATCGCGGGCGGCGATGTGTTCCTTTATCTGGGTTCGTCCAATAGTCAGCTGCGTAACCACGGCTGCTGGTTTGTTCGACCCAGTCCATATCCGGATGAGATACGAGAATGGATGGGAGACTTCAGCAAGATAAGGTGCGTGGCCACATTCATGGCTCGTATGGGGCAGTGCTTTTCAACATCCTTGGACGCTGGTGGGCATAGATGTCAATGA

Transcript

OS493_020020-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1D9Z6	Dicer-like protein 2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Q0CEI2	Dicer-like protein 2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Q7S8J7	Dicer-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020020-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_020020-T1 global co-expression network