Gene detail

Detailed information of OS493_020041-T1 in Lophelia pertusa

Genomic Location: scaffold_72:863914...887896
NR annotation: KAJ7331256.1, hypothetical protein OS493_020041 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CRT8	Exportin-T OS=Mus musculus OX=10090 GN=Xpot PE=1 SV=3
Q5RA02	Exportin-T OS=Pongo abelii OX=9601 GN=XPOT PE=2 SV=1
O43592	Exportin-T OS=Homo sapiens OX=9606 GN=XPOT PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan
PF19282 all species →	Exportin-T	Exportin-T	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040017 all species →	Family	Exportin-T	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR045546 all species →	Domain	Exportin-T, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15952 all species →	EXPORTIN-T/LOS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0016363 all species →	Cellular Component	nuclear matrix	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0071528 all species →	Biological Process	tRNA re-export from nucleus	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020041-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_020041-T1 global co-expression network