Gene detail

Detailed information of OS493_020042-T1 in Lophelia pertusa

Genomic Location: scaffold_72:888014...902742
NR annotation: KAJ7331257.1, hypothetical protein OS493_020042 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43592	Exportin-T OS=Homo sapiens OX=9606 GN=XPOT PE=1 SV=2
Q5RA02	Exportin-T OS=Pongo abelii OX=9601 GN=XPOT PE=2 SV=1
Q5SPJ8	Exportin-T OS=Danio rerio OX=7955 GN=xpot PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002505 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF19282 all species →	Exportin-T	Exportin-T	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040017 all species →	Family	Exportin-T	Interproscan
IPR045546 all species →	Domain	Exportin-T, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15952 all species →	EXPORTIN-T/LOS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006409 all species →	Biological Process	tRNA export from nucleus	Interproscan
GO:0016363 all species →	Cellular Component	nuclear matrix	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0071528 all species →	Biological Process	tRNA re-export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020042-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020042-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

31.9Max TPM

11.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.35	7.39
polyp at pH7 6	18	16	6.91	10.62
coral polyp · control treatment	16	16	15.00	25.38
coral polyp · oil and dispersant treatment	16	16	17.61	27.55
coral polyp · oil treatment	16	16	11.81	22.75
coral polyp · dispersant treatment	16	16	16.79	31.94
Polyp	10	8	3.90	9.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.38
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.