Gene detail

Detailed information of OS493_020045-T1 in Lophelia pertusa

Genomic Location: scaffold_72:930940...931983
NR annotation: KAJ7331260.1, hypothetical protein OS493_020045 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000650 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13151 all species →	DUF3990	Protein of unknown function (DUF3990)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025051 all species →	Family	Protein of unknown function DUF3990	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_020045-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_020045-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020045-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020045-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.6Max TPM

45.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.31	44.67
polyp at pH7 6	18	18	32.87	44.86
coral polyp · control treatment	16	16	55.67	78.34
coral polyp · oil and dispersant treatment	16	16	59.08	80.50
coral polyp · oil treatment	16	16	54.51	89.59
coral polyp · dispersant treatment	16	16	49.41	66.64
Polyp	10	10	32.96	48.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.50
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.14
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.20
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	48.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	34.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	26.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.