Gene detail

Detailed information of OS493_020074-T1 in Lophelia pertusa

Genomic Location: scaffold_72:1401024...1407681
NR annotation: KAJ7331284.1, Proteasome subunit alpha type-5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5E987	Proteasome subunit alpha type-5 OS=Bos taurus OX=9913 GN=PSMA5 PE=1 SV=1
P28066	Proteasome subunit alpha type-5 OS=Homo sapiens OX=9606 GN=PSMA5 PE=1 SV=3
Q9Z2U1	Proteasome subunit alpha type-5 OS=Mus musculus OX=10090 GN=Psma5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00227 all species →	Proteasome	Proteasome subunit	Domain	Interproscan
PF10584 all species →	Proteasome_A_N	Proteasome subunit A N-terminal signature	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001353 all species →	Family	Proteasome, subunit alpha/beta	Interproscan
IPR033812 all species →	Family	Proteasome subunit alpha5	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR050115 all species →	Family	Proteasome subunit alpha	Interproscan
IPR000426 all species →	Domain	Proteasome alpha-subunit, N-terminal domain	Interproscan
IPR023332 all species →	Family	Proteasome alpha-type subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11599 all species →	PROTEASOME SUBUNIT ALPHA/BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005839 all species →	Cellular Component	proteasome core complex	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0019773 all species →	Cellular Component	proteasome core complex, alpha-subunit complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010498 all species →	Biological Process	proteasomal protein catabolic process	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02729	PSMA5; 20S proteasome subunit alpha 5	EC:3.4.25.1	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020074-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

354.0Max TPM

80.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	63.02	101.50
polyp at pH7 6	18	18	77.19	92.16
coral polyp · control treatment	16	16	70.18	124.65
coral polyp · oil and dispersant treatment	16	16	99.38	154.93
coral polyp · oil treatment	16	16	62.21	79.23
coral polyp · dispersant treatment	16	16	65.94	147.81
Polyp	10	10	153.34	354.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	101.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.27
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.13
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.49
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	354.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	308.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	269.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	144.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	121.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	83.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	65.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	65.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	60.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.