Gene detail

Detailed information of OS493_020115-T1 in Lophelia pertusa

Genomic Location: scaffold_73:538111...560399
NR annotation: KAJ7391091.1, Serine/threonine-protein kinase PAK 3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_020115-T1

ATGTCGGACGAAGAACGGCCGCCGGCCCCTCCTATGCGTCATACTTCCACGAAAGATTCTTCAATGTCGCCAGCTTCGAAGCCTTTGCCAAGCGCTCCTGTTGACGAGAAGAAGAAGAAAGCAGCAGCGTTTAATTTTTTCAAGAACAAGGGCGACGAGGATAGGAAATATTCGAAGAAAAAGCCAGAGATCTCCTATCCAACGCAGTTTGAACACACGATTCATGTGGGTTTCGATCCAGTTACCTCCGAATTCACGGGTATGCCAGAAGCATGGGCTCGACTGCTTCACACGTCCAACATCACCCAAGCTGAGCAGAAGAAGAATCCTCAGGCTGTTCTTGATGTCCTAAATTTTTATGAAGGAAGCAAAGAAACAAATGCAAAATTTATGACAGTGTCGAAACCATATGCAACTTCTAGCGAGGGAGTAGACCTTACTTCATCATGTGATACTGTGCCGCCATCACGTCACTTGTCAGCATCCAGTAGCCCACGGCATACATCTGCCTTGGACGACCCCACAGATTTGAAAATAACATGTTCACCATTTAGTTGTACTTCGTCTAAGAGCAAACATTCATCTAAAAGCGGCTTGAAACTAATAATTAAACGGCATTCAAAGAAACGCAGGAAATCATTACCAAGTACTGGTTCGACAAGCAATGAGACAAGAAGGAAAGCTAATAGAGAGGAGCGAAAGTTGTCGTCTCCTTCACCGACACGTGCTCTCCTTACGTCTCAATCAGACACTTCAAGTTCACTTACAGGATCGTCACGAGGGTCATTAGCTGATGAACTTGAGAAATTGAGTGTGAACTCACATTTATCTTCCTCTAATAAATACTCACAACGCATCTCTTCTGATTCTCAAGGTCAAACACAGACATCACGGCCTGAAATAGGTGATAACACATATGCACCTCCTCTTCCACCACATGCCACTCCAACACATACTTTGGCAGCAGAGAATCACAGTGAGCGACCTAATGATTCTGAACCAGATGTGCCTCCAGCCATTCCATCAAGGCCGGAGCACACCAAGTCTAAGTATATACCAAATGAAGTTTCCACAAAGCCAGCAGTCAAAGAAGATGACAAAGCACCTACACATGAGCAGCCAAGAGCACAAACAAGAGACAGGAAGAAGAAAAAGATGTCTGATGAGGAGATTCATTCTAGACTACGTACCATAGTTAGTGTTGGTGATCCCAAAGGAAATACACAAAATTTGAAAAGATTGGTCAGGGTTAATTGGGAATTGCCTCTTTCTAGGGCGTCTGGTACAGTTTATACAGCAATTGAAGTAGCTACAGGACATGAGGTTGCCATTAAACAGATGAACTTGTCCCAGCAACCAAAGAAGGAATTAATTATTAATGAAATTCTGGTGATGAGGGAGAACAAGCATCCTAACATTGTCAACTATGTGGATAGTTACCTTGTAGGAGAAGAGTTATGGGTTGTAATGGAGTATTTAGCTGGGGGTTCTTTAACTGATGTTGTAACAGAGACTTGTATGGATGAAGGACAAATTGCTTCAGTTTCAAGAGAGTGTCTCCAGGCCCTTGATTTTCTGCACAGCAATGGAGTCATACACAGAGATATCAAGAGTGATAACATTCTTTTAGGAATGGATGGACAAGTCAAACTAACTGATTTTGGTTTCTGTGCAACAATAACGCCCGAGCAATCTAAACGTTCCACCATGGTAGGAACACCTTACTGGATGGCTCCAGAAGTGGTCACAAGGAAACAGTATGGACCAAAAGTGGACATTTGGAGTTTAGGAATTATGGCAATTGAGATGGTTGAAGGTGAACCACCATACCTGAATGAAAACCCTCTCAGAGCCTTGTACTTGATAGCCACGAATGGCACACCAGAACTAGCGCATCCAGATAAATTATCTCCAGTATTTAAGGATTTCCTTGCGCAGTCACTGGAAATGGATGTAGATAGGAGAACTGGAGCTAGAGAACTTCTGCAGCATCCATTTTTAAAGCAAGCCAAGCCACTGGCGAGTCTGGTACCGCTCATTCTTGCAGCGAAAGAAGCCAGTTCAAGAAACTCTTAA

Transcript

OS493_020115-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62829	Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus OX=10116 GN=Pak3 PE=1 SV=1
O75914	Serine/threonine-protein kinase PAK 3 OS=Homo sapiens OX=9606 GN=PAK3 PE=1 SV=2
Q7YQL4	Serine/threonine-protein kinase PAK 3 OS=Pan troglodytes OX=9598 GN=PAK3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001590 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00786 all species →	PBD	P21-Rho-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000095 all species →	Domain	CRIB domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR033923 all species →	Domain	p21 activated kinase binding domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR050285 all species →	Family	STE20 Serine/Threonine-Protein Kinase	Interproscan
IPR036936 all species →	Homologous_superfamily	CRIB domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48015 all species →	SERINE/THREONINE-PROTEIN KINASE TAO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0023014 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0043408 all species →	Biological Process	regulation of MAPK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04409	PAK1; p21-activated kinase 1	EC:2.7.11.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_020115-T1 global co-expression network