Gene detail

Detailed information of OS493_020127-T1 in Lophelia pertusa

Genomic Location: scaffold_73:854684...867330
NR annotation: KAJ7391102.1, Serine/threonine-protein kinase 24 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99KH8	Serine/threonine-protein kinase 24 OS=Mus musculus OX=10090 GN=Stk24 PE=1 SV=1
Q9Y6E0	Serine/threonine-protein kinase 24 OS=Homo sapiens OX=9606 GN=STK24 PE=1 SV=1
Q9P289	Serine/threonine-protein kinase 26 OS=Homo sapiens OX=9606 GN=STK26 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001097 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF20929 all species →	PDCD10_N	Programmed cell death protein 10, dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR046409 all species →	Homologous_superfamily	Programmed cell death protein 10, dimerisation domain superfamily	Interproscan
IPR050629 all species →	Family	STE20/SPS1-related Proline-Alanine-rich Kinase	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR048288 all species →	Domain	Programmed cell death protein 10, dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48012 all species →	STERILE20-LIKE KINASE, ISOFORM B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08838	STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4	EC:2.7.11.1	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020127-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.4Max TPM

34.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.27	31.86
polyp at pH7 6	18	18	28.13	44.74
coral polyp · control treatment	16	16	42.83	65.37
coral polyp · oil and dispersant treatment	16	16	44.70	61.25
coral polyp · oil treatment	16	16	37.40	50.07
coral polyp · dispersant treatment	16	16	27.67	40.30
Polyp	10	10	33.48	55.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.64
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.25
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.29
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.50
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.36
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.26
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	55.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	42.19
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	37.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	32.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	28.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.