Gene detail

Detailed information of OS493_020130-T1 in Lophelia pertusa

Genomic Location: scaffold_73:917180...944329
NR annotation: KAJ7391105.1, protein phosphatase 2, regulatory subunit A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32PI5	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus OX=9913 GN=PPP2R1A PE=1 SV=1
P30153	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens OX=9606 GN=PPP2R1A PE=1 SV=4
Q76MZ3	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus OX=10090 GN=Ppp2r1a PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005748 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020130-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR051023 all species →	Family	Protein Phosphatase 2A Regulatory Subunit A	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10648 all species →	SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03456	PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020130-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

157.9Max TPM

66.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	51.07	66.17
polyp at pH7 6	18	18	54.36	72.43
coral polyp · control treatment	16	16	82.67	157.89
coral polyp · oil and dispersant treatment	16	16	86.52	123.18
coral polyp · oil treatment	16	16	67.60	130.19
coral polyp · dispersant treatment	16	16	68.05	120.39
Polyp	10	10	49.20	92.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.87
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	157.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.94
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	102.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.34
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.91
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	92.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	73.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	55.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	51.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	47.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	36.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	31.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.