Detailed information of OS493_020139-T1 in Lophelia pertusa

Genomic Location: scaffold_73:1163170...1172760
NR annotation: KAJ7391114.1, Protein ltv1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4V838Protein LTV1 homolog OS=Xenopus laevis OX=8355 GN=ltv1 PE=2 SV=1
Q0VC06Protein LTV1 homolog OS=Bos taurus OX=9913 GN=LTV1 PE=2 SV=1
Q6NSQ7Protein LTV1 homolog OS=Mus musculus OX=10090 GN=Ltv1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006410 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04180
all species →		LTVLow temperature viability protein FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007307
all species →		FamilyLow temperature viability protein Ltv1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21531
all species →		LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14798LTV1; protein LTV1-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_020139-T1 global co-expression network
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