Gene detail

Detailed information of OS493_020177-T1 in Lophelia pertusa

Genomic Location: scaffold_73:1516950...1525044
NR annotation: KAJ7391147.1, Uridine-cytidine kinase-like 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NWZ5	Uridine-cytidine kinase-like 1 OS=Homo sapiens OX=9606 GN=UCKL1 PE=1 SV=2
Q91YL3	Uridine-cytidine kinase-like 1 OS=Mus musculus OX=10090 GN=Uckl1 PE=1 SV=1
Q55EL3	Uridine-cytidine kinase A OS=Dictyostelium discoideum OX=44689 GN=udkA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00485 all species →	PRK	Phosphoribulokinase / Uridine kinase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006083 all species →	Domain	Phosphoribulokinase/uridine kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10285 all species →	URIDINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020177-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

7.8Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	3.16	7.10
polyp at pH7 6	18	14	3.19	7.75
coral polyp · control treatment	16	16	4.22	6.96
coral polyp · oil and dispersant treatment	16	15	2.80	6.36
coral polyp · oil treatment	16	15	3.28	6.66
coral polyp · dispersant treatment	16	15	2.23	5.99
Polyp	10	9	2.06	4.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.