Gene detail

Detailed information of OS493_020242-T1 in Lophelia pertusa

Genomic Location: scaffold_74:650651...653919
NR annotation: KAJ7384662.1, hypothetical protein OS493_020242 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07326	GPI ethanolamine phosphate transferase, stabilizing subunit OS=Homo sapiens OX=9606 GN=PIGF PE=1 SV=1
O09101	GPI ethanolamine phosphate transferase, stabilizing subunit OS=Mus musculus OX=10090 GN=Pigf PE=1 SV=1
Q5AFT2	Glycosylphosphatidylinositol anchor biosynthesis protein 11 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GPI11 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008588 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06699 all species →	PIG-F	GPI biosynthesis protein family Pig-F	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009580 all species →	Family	GPI biosynthesis protein Pig-F	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_020242-T1 in Lophelia pertusa.

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506 all species →	Biological Process	GPI anchor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05287	PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F	-	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	ko00563	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020242-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

13.2Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.93	8.09
polyp at pH7 6	18	16	3.99	6.00
coral polyp · control treatment	16	16	5.00	13.17
coral polyp · oil and dispersant treatment	16	15	2.98	6.84
coral polyp · oil treatment	16	16	5.31	9.16
coral polyp · dispersant treatment	16	16	2.69	6.72
Polyp	10	9	5.84	12.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.32
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.