Gene detail

Detailed information of OS493_020250-T1 in Lophelia pertusa

Genomic Location: scaffold_74:702293...702763
NR annotation: KAJ7384669.1, hypothetical protein OS493_020250 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8J4S9	Trehalase OS=Apis mellifera OX=7460 PE=1 SV=1
P19813	Trehalase OS=Oryctolagus cuniculus OX=9986 GN=TREH PE=1 SV=1
O43280	Trehalase OS=Homo sapiens OX=9606 GN=TREH PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009162 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01204 all species →	Trehalase	Trehalase	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR001661 all species →	Family	Glycoside hydrolase, family 37	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23403 all species →	TREHALASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004555 all species →	Molecular Function	alpha,alpha-trehalase activity	Interproscan
GO:0005991 all species →	Biological Process	trehalose metabolic process	Interproscan
GO:0005993 all species →	Biological Process	trehalose catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020250-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020250-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

87TPM > 0

7Conditions

9.6Max TPM

1.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	0.71	2.18
polyp at pH7 6	18	9	0.57	3.42
coral polyp · control treatment	16	15	2.00	7.42
coral polyp · oil and dispersant treatment	16	13	1.59	5.51
coral polyp · oil treatment	16	14	2.09	9.56
coral polyp · dispersant treatment	16	15	2.14	5.82
Polyp	10	6	0.59	3.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.