Gene detail

Detailed information of OS493_020262-T1 in Lophelia pertusa

Genomic Location: scaffold_74:767165...771833
NR annotation: KAJ7384681.1, hypothetical protein OS493_020262 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60306	RNA helicase aquarius OS=Homo sapiens OX=9606 GN=AQR PE=1 SV=4
Q8CFQ3	RNA helicase aquarius OS=Mus musculus OX=10090 GN=Aqr PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003643 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21143 all species →	Aquarius_N_2nd	Intron-binding protein aquarius, beta-barrel	Domain	Interproscan
PF21144 all species →	Aquarius_N_3rd	Intron-binding protein aquarius insert domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048966 all species →	Domain	RNA helicase aquarius, beta-barrel	Interproscan
IPR048967 all species →	Domain	RNA helicase aquarius, insertion domain	Interproscan

PANTHER

No PANTHER signature was recorded for OS493_020262-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_020262-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020262-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020262-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

36.3Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	17.62	33.66
polyp at pH7 6	18	17	16.98	32.54
coral polyp · control treatment	16	16	12.39	19.11
coral polyp · oil and dispersant treatment	16	16	7.41	13.87
coral polyp · oil treatment	16	16	11.37	18.90
coral polyp · dispersant treatment	16	16	8.33	19.12
Polyp	10	9	9.46	36.33

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.99
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	36.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.