Gene detail

Detailed information of OS493_020356-T1 in Lophelia pertusa

Genomic Location: scaffold_74:1562045...1564608
NR annotation: KAJ7384764.1, hypothetical protein OS493_020356 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q93104	Enhancer of rudimentary homolog OS=Aedes aegypti OX=7159 PE=3 SV=1
Q3SZC0	Enhancer of rudimentary homolog OS=Bos taurus OX=9913 GN=ERH PE=3 SV=1
P84090	Enhancer of rudimentary homolog OS=Homo sapiens OX=9606 GN=ERH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008638 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01133 all species →	ER	Enhancer of rudimentary	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000781 all species →	Family	Enhancer of rudimentary	Interproscan
IPR035912 all species →	Homologous_superfamily	Enhancer of rudimentary superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12373 all species →	ENHANCER OF RUDIMENTARY ERH	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_020356-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020356-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020356-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

115.7Max TPM

55.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	71.91	115.69
polyp at pH7 6	18	18	64.83	93.88
coral polyp · control treatment	16	16	54.28	90.81
coral polyp · oil and dispersant treatment	16	16	42.56	72.75
coral polyp · oil treatment	16	16	46.38	78.56
coral polyp · dispersant treatment	16	16	41.83	68.22
Polyp	10	10	66.72	106.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	114.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.48
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.12
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.70
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	106.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	95.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	78.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	75.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	69.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	58.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	49.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	49.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.