Gene detail

Detailed information of OS493_020380-T1 in Lophelia pertusa

Genomic Location: scaffold_74:1711053...1726759
NR annotation: KAJ7384788.1, E3 ubiquitin-protein ligase pellino 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8C669	E3 ubiquitin-protein ligase pellino homolog 1 OS=Mus musculus OX=10090 GN=Peli1 PE=1 SV=2
Q9HAT8	E3 ubiquitin-protein ligase pellino homolog 2 OS=Homo sapiens OX=9606 GN=PELI2 PE=1 SV=1
Q96FA3	E3 ubiquitin-protein ligase pellino homolog 1 OS=Homo sapiens OX=9606 GN=PELI1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20723 all species →	Pellino_RING	Pellino, RING domain	Domain	Interproscan
PF04710 all species →	Pellino_FHA	Pellino, FHA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006800 all species →	Family	Pellino family	Interproscan
IPR048335 all species →	Domain	Pellino, RING domain	Interproscan
IPR048334 all species →	Domain	Pellino, FHA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12098 all species →	E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0008592 all species →	Biological Process	regulation of Toll signaling pathway	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11964	PELI; pellino	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020380-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

134.9Max TPM

62.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	64.87	98.24
polyp at pH7 6	18	18	62.93	97.15
coral polyp · control treatment	16	16	79.38	134.88
coral polyp · oil and dispersant treatment	16	16	76.24	122.65
coral polyp · oil treatment	16	16	63.55	89.39
coral polyp · dispersant treatment	16	16	41.13	60.46
Polyp	10	10	37.16	67.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	98.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.92
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.60
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	105.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.84
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.29
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.72
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	67.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	51.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	37.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	27.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.13

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.