Gene detail

Detailed information of OS493_020382-T1 in Lophelia pertusa

Genomic Location: scaffold_74:1734628...1737345
NR annotation: KAJ7384790.1, hypothetical protein OS493_020382 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60969	Serine/threonine/tyrosine-interacting protein OS=Mus musculus OX=10090 GN=Styx PE=1 SV=2
Q5U593	Serine/threonine/tyrosine-interacting protein B OS=Xenopus laevis OX=8355 GN=styx-b PE=2 SV=1
Q8WUJ0	Serine/threonine/tyrosine-interacting protein OS=Homo sapiens OX=9606 GN=STYX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006859 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020382-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052449 all species →	Family	Serine/Threonine/Tyrosine-Interacting Phosphatase	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46588 all species →	SERINE/THREONINE/TYROSINE-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032091 all species →	Biological Process	negative regulation of protein binding	Interproscan
GO:0062026 all species →	Biological Process	negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process	Interproscan
GO:0070372 all species →	Biological Process	regulation of ERK1 and ERK2 cascade	Interproscan
GO:1990444 all species →	Molecular Function	F-box domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020382-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020382-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

31.2Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	6.89	15.40
polyp at pH7 6	18	11	4.79	13.38
coral polyp · control treatment	16	16	11.02	31.22
coral polyp · oil and dispersant treatment	16	16	8.47	26.55
coral polyp · oil treatment	16	16	8.22	14.17
coral polyp · dispersant treatment	16	15	6.26	11.71
Polyp	10	8	5.05	10.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.