Gene detail

Detailed information of OS493_020454-T1 in Lophelia pertusa

Genomic Location: scaffold_75:1087786...1091328
NR annotation: KAJ7378852.1, hypothetical protein OS493_020454 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001101 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020454-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33995 all species →	PROTEIN CBG18546	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_020454-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020454-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020454-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

14.5Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.31	9.35
polyp at pH7 6	18	16	4.22	14.48
coral polyp · control treatment	16	16	2.94	4.49
coral polyp · oil and dispersant treatment	16	16	3.74	5.59
coral polyp · oil treatment	16	16	3.38	7.28
coral polyp · dispersant treatment	16	16	2.58	7.70
Polyp	10	10	2.38	6.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.52

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.