Gene detail

Detailed information of OS493_020461-T1 in Lophelia pertusa

Genomic Location: scaffold_75:1160509...1161027
NR annotation: KAJ7378859.1, hypothetical protein OS493_020461 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001101 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020461-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33995 all species →	PROTEIN CBG18546	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_020461-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020461-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020461-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,410.2Max TPM

112.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.86	20.71
polyp at pH7 6	18	18	14.38	42.08
coral polyp · control treatment	16	16	113.25	420.12
coral polyp · oil and dispersant treatment	16	16	231.15	603.32
coral polyp · oil treatment	16	16	105.05	411.62
coral polyp · dispersant treatment	16	16	269.80	1,410.24
Polyp	10	10	40.03	160.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	420.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	377.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	603.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	400.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	400.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	335.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	334.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	308.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	306.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	240.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.58
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	411.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	364.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	282.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	171.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.42
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.62
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,410.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	435.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	416.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	376.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	352.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	282.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	259.68
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	236.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	160.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	155.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	51.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.