Gene detail

Detailed information of OS493_020465-T1 in Lophelia pertusa

Genomic Location: scaffold_75:1188631...1190203
NR annotation: KAJ7378863.1, hypothetical protein OS493_020465 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008310 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05217 all species →	SAXO1-2	Stabilizer of axonemal microtubules 1/2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033336 all species →	Family	Stabilizer of axonemal microtubules 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31516 all species →	STABILIZER OF AXONEMAL MICROTUBULES 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25472	SAXO; stabilizer of axonemal microtubules	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020465-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

74.5Max TPM

11.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.86	14.14
polyp at pH7 6	18	18	5.68	9.33
coral polyp · control treatment	16	16	19.22	74.49
coral polyp · oil and dispersant treatment	16	16	14.28	45.89
coral polyp · oil treatment	16	16	10.55	19.16
coral polyp · dispersant treatment	16	16	14.83	32.13
Polyp	10	10	4.64	8.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.98
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.76
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.42
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.