Gene detail

Detailed information of OS493_020515-T1 in Lophelia pertusa

Genomic Location: scaffold_76:258322...268154
NR annotation: KAJ7372091.1, hypothetical protein OS493_020515 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NDL2	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Homo sapiens OX=9606 GN=EOGT PE=1 SV=1
Q5NDL1	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Pan troglodytes OX=9598 GN=EOGT PE=2 SV=1
Q5NDL9	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Canis lupus familiaris OX=9615 GN=EOGT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001830 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04577 all species →	Glyco_transf_61	Glycosyltransferase 61	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007657 all species →	Family	Glycosyltransferase 61	Interproscan
IPR049625 all species →	Domain	Glycosyltransferase 61, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20961 all species →	GLYCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan
GO:0097370 all species →	Biological Process	protein O-GlcNAcylation via threonine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18134	EOGT; EGF domain-specific O-GlcNAc transferase	EC:2.4.1.255	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020515-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

27.9Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.47	10.77
polyp at pH7 6	18	17	7.17	10.32
coral polyp · control treatment	16	16	13.57	22.72
coral polyp · oil and dispersant treatment	16	16	10.58	27.87
coral polyp · oil treatment	16	16	11.75	21.88
coral polyp · dispersant treatment	16	16	8.58	19.86
Polyp	10	10	7.74	16.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.19
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.87
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.83

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.