Gene detail

Detailed information of OS493_020525-T1 in Lophelia pertusa

Genomic Location: scaffold_76:345379...349660
NR annotation: KAJ7372100.1, ER membrane protein complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PJA8	Endoplasmic reticulum membrane protein complex subunit 7 OS=Bos taurus OX=9913 GN=EMC7 PE=2 SV=1
Q5TYV0	Endoplasmic reticulum membrane protein complex subunit 7 OS=Danio rerio OX=7955 GN=emc7 PE=2 SV=1
Q9EP72	Endoplasmic reticulum membrane protein complex subunit 7 OS=Mus musculus OX=10090 GN=Emc7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09430 all species →	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039163 all species →	Family	ER membrane protein complex subunit 7	Interproscan
IPR013784 all species →	Homologous_superfamily	Carbohydrate-binding-like fold	Interproscan
IPR019008 all species →	Domain	ER membrane protein complex subunit 7, beta-sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13605 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0072546 all species →	Cellular Component	EMC complex	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23568	EMC7; ER membrane protein complex subunit 7	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020525-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

116.4Max TPM

40.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.29	36.10
polyp at pH7 6	18	18	28.64	53.94
coral polyp · control treatment	16	16	47.09	83.40
coral polyp · oil and dispersant treatment	16	16	75.01	116.35
coral polyp · oil treatment	16	16	40.29	56.63
coral polyp · dispersant treatment	16	16	41.13	106.48
Polyp	10	10	23.52	42.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.69
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.37
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.17
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.