Gene detail

Detailed information of OS493_020527-T1 in Lophelia pertusa

Genomic Location: scaffold_76:351544...356776
NR annotation: KAJ7372102.1, Mitochondria-eating protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q503Q1	Mitochondria-eating protein OS=Danio rerio OX=7955 GN=spata18 PE=2 SV=2
E1BLK7	Mitochondria-eating protein OS=Bos taurus OX=9913 GN=SPATA18 PE=3 SV=1
E1BW58	Mitochondria-eating protein OS=Gallus gallus OX=9031 GN=SPATA18 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16026 all species →	MIEAP	Mitochondria-eating protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026169 all species →	Family	Mitochondria-eating protein	Interproscan
IPR031981 all species →	Domain	Mitochondria-eating protein, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21771 all species →	MITOCHONDRIA-EATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0035694 all species →	Biological Process	mitochondrial protein catabolic process	Interproscan
GO:0035695 all species →	Biological Process	mitophagy by internal vacuole formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22257	SPATA18; mitochondria-eating protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020527-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

10.3Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.24	6.65
polyp at pH7 6	18	18	4.78	7.61
coral polyp · control treatment	16	16	5.51	10.00
coral polyp · oil and dispersant treatment	16	15	3.16	4.82
coral polyp · oil treatment	16	16	4.77	7.55
coral polyp · dispersant treatment	16	16	2.92	5.27
Polyp	10	10	7.13	10.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.29

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.