Gene detail

Detailed information of OS493_020582-T1 in Lophelia pertusa

Genomic Location: scaffold_76:891053...891658
NR annotation: KAJ7372156.1, hypothetical protein OS493_020582 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010993 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18775 all species →	APOBEC4	APOBEC4	Family	Interproscan

InterPro

No InterPro signature was recorded for OS493_020582-T1 in Lophelia pertusa.

PANTHER

No PANTHER signature was recorded for OS493_020582-T1 in Lophelia pertusa.

Gene Ontology

No Gene Ontology signature was recorded for OS493_020582-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020582-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020582-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.5Max TPM

29.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	42.12	55.40
polyp at pH7 6	18	18	38.95	59.24
coral polyp · control treatment	16	16	33.74	75.50
coral polyp · oil and dispersant treatment	16	16	17.93	47.80
coral polyp · oil treatment	16	16	28.30	60.16
coral polyp · dispersant treatment	16	16	19.79	57.53
Polyp	10	10	14.09	28.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.40
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.02
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.46
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.33
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.