Detailed information of OS493_020589-T1 in Lophelia pertusa

Genomic Location: scaffold_76:967493...973323
NR annotation: KAJ7372162.1, sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PFJ7Sphingomyelin phosphodiesterase 4 OS=Danio rerio OX=7955 GN=smpd4 PE=2 SV=1
Q5XHG1Sphingomyelin phosphodiesterase 4 OS=Xenopus laevis OX=8355 GN=smpd4 PE=2 SV=2
Q6ZPR5Sphingomyelin phosphodiesterase 4 OS=Mus musculus OX=10090 GN=Smpd4 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004874 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14724
all species →		mit_SMPDaseMitochondrial-associated sphingomyelin phosphodiesteraseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024129
all species →		FamilySphingomyelin phosphodiesterase 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12988
all species →		SPHINGOMYELIN PHOSPHODIESTERASE 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0050290
all species →		Molecular Functionsphingomyelin phosphodiesterase D activityInterproscan
GO:0006685
all species →		Biological Processsphingomyelin catabolic processInterproscan
GO:0046475
all species →		Biological Processglycerophospholipid catabolic processInterproscan
GO:0046513
all species →		Biological Processceramide biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_020589-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_020589-T1 global co-expression network
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