Gene detail

Detailed information of OS493_020597-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1055695...1063976
NR annotation: KAJ7372168.1, Zinc finger CW-type PWWP domain protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q504Y3	Zinc finger CW-type PWWP domain protein 2 OS=Homo sapiens OX=9606 GN=ZCWPW2 PE=1 SV=1
Q08EN7	Zinc finger CW-type PWWP domain protein 2 homolog OS=Mus musculus OX=10090 GN=Zcwpw2 PE=2 SV=2
Q6IR42	Zinc finger CW-type PWWP domain protein 1 OS=Mus musculus OX=10090 GN=Zcwpw1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001898 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07496 all species →	zf-CW	CW-type Zinc Finger	Domain	Interproscan
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR011124 all species →	Domain	Zinc finger, CW-type	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR042778 all species →	Family	Zinc finger CW-type PWWP domain protein ZCWPW1/ZCWPW2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15999 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24690	ZCWPW2; zinc finger CW-type PWWP domain protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020597-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

212.3Max TPM

29.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.32	10.99
polyp at pH7 6	18	18	6.88	11.40
coral polyp · control treatment	16	16	29.87	117.04
coral polyp · oil and dispersant treatment	16	16	70.49	141.73
coral polyp · oil treatment	16	16	22.89	40.25
coral polyp · dispersant treatment	16	16	61.82	212.26
Polyp	10	10	7.63	17.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.09
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	212.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.51
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.54
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.