Gene detail

Detailed information of OS493_020599-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1068432...1081065
NR annotation: KAJ7372170.1, calpain 7 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_020599-T1

ATGGTGGACGCAAAGGAACTTTGCGATGATGGTTACAGATTAGCCATACAAGCAGTCGATTTAGACAAGATTGGCAGTGGAAATGCCGCCGCTTTTTTCTACATCGAGGCTTCAGAAGCTCTGATAAAAGCGTTATCTTATGATCCCACACTAGATGTGAAAGATAAAGCCTCGCAGTACATCAGACGAGCGGAGGCCCTTCGAGCTCTGGAACAAGGTTTAACAACAACACCTGCTTCTTTCAAGTCTTCACAACAGAATGGTGTAGAAAGAGCTGAATTTCTTCTGAAGCAAGCACTTTATGAAGATGAAAGGAATCGACCAAATGATGCATTGCCACTCTATACCGATGCAGCAGCACTCTGCATTAAAACAAGCAGCGGTCTACCAGATGATGATGATTTGAAGAAAAAACTTCATTTCCGTGCTAAACAAGCAATAGAGAGAGCTGAAGCAATAAAGGGAATTTTAAGAACCTCAGCATCAGGCTCAACATCCATCACCAAAGCTGTCAAGGACCTCTCCCTGAGGTCCACTGGAGAGTCCACCCCTGGGGGTAGTACTGGGGACAAAAGGCCTCATCTCACAGCTAAGGAACTGGATGTCTTAAAGAAAACATCCTACATAAATGGCAAGCTATTTCCTCCATGGCTGGATATTGATCTGAAAGAAAGATTTGCTTATCCAGATTATTATAGTGATAAAGATGGACAGCTTGCACTTTCACAGAAACAAAGAGCTCGTTTTGCCAAGTGGTTAAGACCAACAGAATTGTGTGAAAACCCAGAGATGATTTATGCCATATCAAGCTTCAGTATCAAACAGACTATTGTGTCCGACTGCTCATTTCTAGCTTCACTTGCCATCAGTGCTGCATATGAGAGAAACTTTAAACAGAGTCTTATAACAAGCATAATTTATCCACAAAATCGTGCAGGGAAACCTGTTATCAACCCGTCAGGAAAATACATGATTAAATTGCGGGTTAATGGAGTCTCCAGAAAGGTGATTATCGATGATACTCTGCCGGTGGGAAGAGACGGAGAGCTGTTATGCTCCTACTCAAACAATCGCAATGAGATGTGGGTCAGTTTAATTGAAAAGGCTTATCTCAAGGTGATGGGAGGGTATGATTTTCCAGGTTCCAATTCTAGTATTGATCTTCACGCTCTCACGGGCTGGATTCCAGAGCGGACGTCCATCAAGCGAAATAATCCAGCATTCAATGAGAGTATGCATTTTGATCGGCTCTTGAATGGAGTCAGAAAAGGCGACTGTCTTATCACCGTAGCAACAGGCCCAATGAGTGAGAGTGATGCTGACCGAGCAGGGCTGGTACCTACTCATGCCTATGCCTTGTTGGATATAAGAAAAGTCTTGGGACATCGTCTGCTTCAACTCAAAAACCCCTGGAGTCATTTAAGATGGAAAGGAATGTTCTCCGAAATGGACTCAACTAACTGGACACCAGAACTTCAGAGAGCGCTCAATTACGACAGAAAGAGTGCTCTTCAAATTGACAATGGAGTTTTTTGGATTAGCTGGGAATGTGTCATGCAATTTTTCGACGTGATTTATATGAACTGGAATCCCAAACTCTTCAAATATCGCTTCGCCCTCCATTCGACTTGGACAGCCGCAGAAGGGCCAAAGAAAGATGTTTATAATATGGGAGACAACCCGCAGTACAAACTTGAGTTGTTATCTGGTGACAGCGATGCTGTTGTATGGATTCTCCTCACTCGACACATCACACAAAAGGATGATTTTGCTGAGAACAAAGAGTTCATAACAGTTCATGTGTTCAAGTCAGACGGAGGCAGAATCTTTTATCCAGATAACCCGTTGTTGGAAGGCACAAAAATCAACAGTCCATTTTACTTGGCTAAACTCAATGCCCCCAAAGGAACAAACCGGTTCACGCTTGTGGTGTCTCAGTACGAGAAAACTAATACCATTCATTATACTATCAAGGTATTTTCAACCACTGAATTCCGTTTATCCGCAGTCCCCGTCCCATACACAGTTGAAAAACAGGTGAATGGTGAATGGCGTGGTAACCTAGCTGGTGGATGTCCTAATTACTCCTCGCATTCCAGTAATCCTGTCTATCGCCTGCAGGTCAAGACTTCGTCGCCTTCAGAAACCGCTGAAGTTCTATTAAAACTACGCGGGCCCAAGCAATTTTCAGTTGGAGCCATATTTCGCTCGGTTGACCGCGCCTCCGACGGGAAGCCTGTGTACGAGGCCTACTCTGAGACTTACAGGCCTGGCTTTTACGTTCAGCAGCTGGCCAGGGTGCCTACGGGAACATATGACGTGATCCCTTCGACCTTTTATCCAGGGCAAGAAGGGCCGTTTATATTGACGATAGCAGCAAGCTGTAAGATTGCACTGGCGAGGAAGTAG

Transcript

OS493_020599-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1S8	Calpain-7 OS=Mus musculus OX=10090 GN=Capn7 PE=2 SV=1
Q9Y6W3	Calpain-7 OS=Homo sapiens OX=9606 GN=CAPN7 PE=1 SV=1
A0FKG7	Calpain-7 OS=Sus scrofa OX=9823 GN=CAPN7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003919 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04212 all species →	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022683 all species →	Domain	Peptidase C2, calpain, domain III	Interproscan
IPR036181 all species →	Homologous_superfamily	MIT domain superfamily	Interproscan
IPR007330 all species →	Domain	MIT domain	Interproscan
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036213 all species →	Homologous_superfamily	Calpain large subunit, domain III superfamily	Interproscan
IPR022684 all species →	Family	Peptidase C2, calpain family	Interproscan
IPR051297 all species →	Family	PalB/RIM13 Calpain-like Protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46143 all species →	CALPAIN-7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08576	CAPN7; calpain-7	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_020599-T1 global co-expression network