Gene detail

Detailed information of OS493_020621-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1351080...1360864
NR annotation: KAJ7372192.1, Plexin domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZV7	Plexin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Plxdc1 PE=1 SV=2
Q9DC11	Plexin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Plxdc2 PE=1 SV=1
Q6UX71	Plexin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PLXDC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001293 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020621-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR031152 all species →	Family	Plexin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13055 all species →	TUMOR ENDOTHELIAL MARKER 7 RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_020621-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020621-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020621-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.1Max TPM

19.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.41	28.32
polyp at pH7 6	18	18	17.58	28.52
coral polyp · control treatment	16	16	24.62	61.10
coral polyp · oil and dispersant treatment	16	16	23.20	50.27
coral polyp · oil treatment	16	16	21.11	33.85
coral polyp · dispersant treatment	16	16	12.49	35.23
Polyp	10	10	25.83	56.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	56.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	42.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	31.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.