Gene detail

Detailed information of OS493_020622-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1364895...1375251
NR annotation: KAJ7372193.1, Plexin domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DC11	Plexin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Plxdc2 PE=1 SV=1
Q6DE92	Plexin domain-containing protein 2 OS=Xenopus laevis OX=8355 GN=plxdc2 PE=2 SV=1
Q6UX71	Plexin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=PLXDC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001293 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_020622-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR031152 all species →	Family	Plexin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13055 all species →	TUMOR ENDOTHELIAL MARKER 7 RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_020622-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020622-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020622-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

225.3Max TPM

53.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.69	43.49
polyp at pH7 6	18	18	28.64	51.76
coral polyp · control treatment	16	16	61.35	136.82
coral polyp · oil and dispersant treatment	16	16	104.13	213.87
coral polyp · oil treatment	16	16	48.93	86.29
coral polyp · dispersant treatment	16	16	83.19	225.28
Polyp	10	10	19.47	30.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.49
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.72
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	213.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.54
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.84
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.95
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	225.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	24.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.