Detailed information of OS493_020640-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1528392...1535854
NR annotation: KAJ7372206.1, TFIIH basal transcription factor complex helicase XPB subunit [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1RMT1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Bos taurus OX=9913 GN=ERCC3 PE=2 SV=1
P19447General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Homo sapiens OX=9606 GN=ERCC3 PE=1 SV=1
Q60HG1General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Macaca fascicularis OX=9541 GN=ERCC3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004047 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16203
all species →		ERCC3_RAD25_CERCC3/RAD25/XPB C-terminal helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001161
all species →		FamilyHelicase XPB/Ssl2Interproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR050615
all species →		FamilyATP-dependent DNA HelicaseInterproscan
IPR032438
all species →		DomainERCC3/RAD25/XPB helicase, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11274
all species →		RAD25/XP-B DNA REPAIR HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003678
all species →		Molecular FunctionDNA helicase activityInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0006367
all species →		Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0000112
all species →		Cellular Componentnucleotide-excision repair factor 3 complexInterproscan
GO:0005675
all species →		Cellular Componenttranscription factor TFIIH holo complexInterproscan
GO:0043138
all species →		Molecular Function3'-5' DNA helicase activityInterproscan
GO:0097550
all species →		Cellular Componenttranscription preinitiation complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_020640-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_020640-T1 global co-expression network
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