Gene detail

Detailed information of OS493_020647-T1 in Lophelia pertusa

Genomic Location: scaffold_76:1582723...1589238
NR annotation: KAJ7372212.1, ATP synthase subunit beta, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLC5	ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Gallus gallus OX=9031 GN=ATP5F1B PE=1 SV=1
P00829	ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=ATP5F1B PE=1 SV=2
Q9PTY0	ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Cyprinus carpio OX=7962 GN=ATP5F1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003927 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF02874 all species →	ATP-synt_ab_N	ATP synthase alpha/beta family, beta-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005722 all species →	Family	ATP synthase, F1 complex, beta subunit	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR024034 all species →	Homologous_superfamily	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Interproscan
IPR036121 all species →	Homologous_superfamily	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004100 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Interproscan
IPR050053 all species →	Family	ATPase alpha/beta chains	Interproscan
IPR020003 all species →	Active_site	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15184 all species →	ATP SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045261 all species →	Cellular Component	proton-transporting ATP synthase complex, catalytic core F(1)	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046034 all species →	Biological Process	ATP metabolic process	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005753 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex	Interproscan
GO:0042776 all species →	Biological Process	proton motive force-driven mitochondrial ATP synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02133	ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta	EC:7.1.2.2	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020647-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,402.5Max TPM

367.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	379.56	506.98
polyp at pH7 6	18	18	413.12	547.81
coral polyp · control treatment	16	16	428.17	2,402.50
coral polyp · oil and dispersant treatment	16	16	408.03	2,361.88
coral polyp · oil treatment	16	16	297.37	410.83
coral polyp · dispersant treatment	16	16	228.57	326.85
Polyp	10	10	436.02	687.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	506.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	498.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	439.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	429.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	421.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	408.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	399.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	395.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	383.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	368.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	360.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	352.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	335.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	329.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	310.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	306.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	294.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	290.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	547.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	514.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	487.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	487.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	433.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	426.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	426.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	425.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	418.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	415.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	414.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	412.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	367.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	366.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	334.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	332.53
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	313.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	310.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,402.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	356.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	354.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	347.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	340.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	330.29
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	328.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	311.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	308.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	294.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	292.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	288.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	241.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	219.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	218.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,361.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	375.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	336.55
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	328.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	303.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	298.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	284.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	271.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	257.16
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	249.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	226.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	211.80
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	410.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	407.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	374.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	366.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	343.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	335.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	298.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	273.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	272.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	266.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	263.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	254.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	243.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	237.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	216.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	193.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	326.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	307.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	304.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	294.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	294.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	263.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	231.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	223.17
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	155.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	153.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	148.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	687.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	537.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	500.56
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	466.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	418.87
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	392.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	353.44
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	352.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	349.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	300.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.