Gene detail

Detailed information of OS493_020714-T1 in Lophelia pertusa

Genomic Location: scaffold_77:759445...771155
NR annotation: KAJ7358876.1, bifunctional diacylglycerol diphosphate phosphatase/phosphatidate phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RZW4	Dipeptidyl peptidase 3 OS=Nematostella vectensis OX=45351 GN=dpp3 PE=3 SV=1
O55096	Dipeptidyl peptidase 3 OS=Rattus norvegicus OX=10116 GN=Dpp3 PE=1 SV=2
Q9NY33	Dipeptidyl peptidase 3 OS=Homo sapiens OX=9606 GN=DPP3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003540 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03571 all species →	Peptidase_M49	Peptidase family M49	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039461 all species →	Family	Peptidase family M49	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23422 all species →	DIPEPTIDYL PEPTIDASE III-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020714-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020714-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

23.1Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.53	11.47
polyp at pH7 6	18	18	7.04	12.27
coral polyp · control treatment	16	16	9.39	20.39
coral polyp · oil and dispersant treatment	16	16	7.35	21.11
coral polyp · oil treatment	16	16	7.78	16.00
coral polyp · dispersant treatment	16	16	8.23	23.11
Polyp	10	10	7.26	13.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.72
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.65
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.