Gene detail

Detailed information of OS493_020762-T1 in Lophelia pertusa

Genomic Location: scaffold_77:1377005...1410545
NR annotation: KAJ7358921.1, Glutathione S-transferase zeta-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVL0	Maleylacetoacetate isomerase OS=Mus musculus OX=10090 GN=Gstz1 PE=1 SV=1
P57113	Maleylacetoacetate isomerase OS=Rattus norvegicus OX=10116 GN=Gstz1 PE=1 SV=2
Q9VHD2	Probable maleylacetoacetate isomerase 2 OS=Drosophila melanogaster OX=7227 GN=GstZ2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004093 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14497 all species →	GST_C_3	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF13409 all species →	GST_N_2	Glutathione S-transferase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR040079 all species →	Family	Glutathione transferase family	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR034330 all species →	Domain	Glutathione S-transferases, class Zeta , C-terminal	Interproscan
IPR034333 all species →	Domain	Glutathione S-transferases, class Zeta , N-terminal	Interproscan
IPR004046 all species →	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR005955 all species →	Family	Glutathione S-transferases, class Zeta	Interproscan
IPR004045 all species →	Domain	Glutathione S-transferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42673 all species →	MALEYLACETOACETATE ISOMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009072 all species →	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0004364 all species →	Molecular Function	glutathione transferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0016034 all species →	Molecular Function	maleylacetoacetate isomerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01800	maiA, GSTZ1; maleylacetoacetate isomerase	EC:5.2.1.2	Styrene degradation	ko00643	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020762-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.9Max TPM

18.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.50	33.46
polyp at pH7 6	18	18	25.87	41.27
coral polyp · control treatment	16	16	16.12	22.68
coral polyp · oil and dispersant treatment	16	16	14.36	31.43
coral polyp · oil treatment	16	16	17.22	24.20
coral polyp · dispersant treatment	16	16	13.70	23.09
Polyp	10	10	22.27	41.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.65
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.41
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.46
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.51

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.