Gene detail

Detailed information of OS493_020862-T1 in Lophelia pertusa

Genomic Location: scaffold_78:770011...777860
NR annotation: KAJ7331159.1, Tubulin polymerization-promoting protein member 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59282	Tubulin polymerization-promoting protein family member 2 OS=Homo sapiens OX=9606 GN=TPPP2 PE=1 SV=2
Q4R3A0	Tubulin polymerization-promoting protein family member 2 OS=Macaca fascicularis OX=9541 GN=TPPP2 PE=2 SV=1
Q3T077	Tubulin polymerization-promoting protein family member 2 OS=Bos taurus OX=9913 GN=TPPP2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007737 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05517 all species →	p25-alpha	p25-alpha	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008907 all species →	Family	Tubulin polymerization-promoting protein	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12932 all species →	P25 ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001578 all species →	Biological Process	microtubule bundle formation	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan
GO:0032273 all species →	Biological Process	positive regulation of protein polymerization	Interproscan
GO:0046785 all species →	Biological Process	microtubule polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25698	TPPP2; tubulin polymerization-promoting protein family member 2	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020862-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

413.2Max TPM

175.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	206.13	315.92
polyp at pH7 6	18	18	201.51	362.26
coral polyp · control treatment	16	16	153.89	277.68
coral polyp · oil and dispersant treatment	16	16	121.80	246.65
coral polyp · oil treatment	16	16	190.98	413.21
coral polyp · dispersant treatment	16	16	155.14	336.58
Polyp	10	10	200.36	312.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	315.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	303.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	235.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	233.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	214.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	207.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	206.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	202.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	197.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	194.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	193.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	185.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	174.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.85
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	161.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	362.26
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	319.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	293.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	276.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	237.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	233.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	200.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	198.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	196.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	181.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	277.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	172.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	171.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	188.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.74
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	413.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	260.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	258.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	249.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	215.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	207.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	201.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	137.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	336.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	254.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	239.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	202.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	201.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	170.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	156.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	312.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	305.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	300.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	269.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	234.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	149.41
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	145.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	98.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	97.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	89.89

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.