Gene detail

Detailed information of OS493_020865-T1 in Lophelia pertusa

Genomic Location: scaffold_78:869862...879534
NR annotation: KAJ7331162.1, WW domain binding protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R478	WW domain-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Wbp2 PE=1 SV=1
Q969T9	WW domain-binding protein 2 OS=Homo sapiens OX=9606 GN=WBP2 PE=1 SV=1
P97765	WW domain-binding protein 2 OS=Mus musculus OX=10090 GN=Wbp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007641 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044852 all species →	Family	WW domain-binding protein 2-like	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31606 all species →	WW DOMAIN BINDING PROTEIN 2, ISOFORM E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22524	WBP2; WW domain-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020865-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

182.7Max TPM

96.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	62.85	87.74
polyp at pH7 6	18	18	66.16	100.04
coral polyp · control treatment	16	16	112.40	150.87
coral polyp · oil and dispersant treatment	16	16	149.84	182.73
coral polyp · oil treatment	16	16	105.23	141.93
coral polyp · dispersant treatment	16	16	109.06	162.74
Polyp	10	10	68.46	113.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	85.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.26
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.04
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	150.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	175.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	164.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	164.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	161.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	150.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	127.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	113.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	89.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	84.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	75.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	71.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	70.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	56.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	48.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	31.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.