Gene detail

Detailed information of OS493_020881-T1 in Lophelia pertusa

Genomic Location: scaffold_78:1030996...1040682
NR annotation: KAJ7331178.1, Eukaryotic elongation factor 2 kinase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70531	Eukaryotic elongation factor 2 kinase OS=Rattus norvegicus OX=10116 GN=Eef2k PE=1 SV=1
O00418	Eukaryotic elongation factor 2 kinase OS=Homo sapiens OX=9606 GN=EEF2K PE=1 SV=2
O08796	Eukaryotic elongation factor 2 kinase OS=Mus musculus OX=10090 GN=Eef2k PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004698 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02816 all species →	Alpha_kinase	Alpha-kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR004166 all species →	Domain	Alpha-type protein kinase, alpha-kinase domain	Interproscan
IPR051852 all species →	Family	Alpha-type Protein Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45992 all species →	EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004686 all species →	Molecular Function	elongation factor-2 kinase activity	Interproscan
GO:0031037 all species →	Biological Process	myosin II filament disassembly	Interproscan
GO:1903013 all species →	Biological Process	response to differentiation-inducing factor 1	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020881-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020881-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.4Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.60	14.05
polyp at pH7 6	18	18	9.51	14.75
coral polyp · control treatment	16	16	13.69	32.39
coral polyp · oil and dispersant treatment	16	16	9.56	21.56
coral polyp · oil treatment	16	16	12.81	26.64
coral polyp · dispersant treatment	16	16	9.18	15.65
Polyp	10	9	6.03	10.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.72
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.