Gene detail

Detailed information of OS493_020883-T1 in Lophelia pertusa

Genomic Location: scaffold_78:1059559...1066626
NR annotation: KAJ7331180.1, hypothetical protein OS493_020883 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CXB8	Alpha-protein kinase 1 OS=Mus musculus OX=10090 GN=Alpk1 PE=2 SV=2
Q96QP1	Alpha-protein kinase 1 OS=Homo sapiens OX=9606 GN=ALPK1 PE=1 SV=3
Q9BX84	Transient receptor potential cation channel subfamily M member 6 OS=Homo sapiens OX=9606 GN=TRPM6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003041 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02816 all species →	Alpha_kinase	Alpha-kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR004166 all species →	Domain	Alpha-type protein kinase, alpha-kinase domain	Interproscan
IPR043529 all species →	Family	Alpha-protein kinase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46747 all species →	ALPHA-PROTEIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0002753 all species →	Biological Process	cytoplasmic pattern recognition receptor signaling pathway	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020883-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020883-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.4Max TPM

12.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.75	22.03
polyp at pH7 6	18	18	13.60	19.15
coral polyp · control treatment	16	16	13.05	19.36
coral polyp · oil and dispersant treatment	16	16	9.55	21.45
coral polyp · oil treatment	16	16	14.20	22.39
coral polyp · dispersant treatment	16	16	9.19	16.62
Polyp	10	10	17.35	30.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.49
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.61
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.58
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.