Gene detail

Detailed information of OS493_020915-T1 in Lophelia pertusa

Genomic Location: scaffold_79:85075...97984
NR annotation: KAJ7390895.1, hypothetical protein OS493_020915 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18444	N-myc proto-oncogene protein OS=Gallus gallus OX=9031 GN=MYCN PE=3 SV=1
Q61976	N-myc proto-oncogene protein OS=Marmota monax OX=9995 GN=MYCN PE=3 SV=1
P04198	N-myc proto-oncogene protein OS=Homo sapiens OX=9606 GN=MYCN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010070 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050433 all species →	Family	Myc family transcription factors	Interproscan
IPR002418 all species →	Family	Transcription regulator Myc	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851 all species →	MYC PROTO-ONCOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_020915-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_020915-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

9.3Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.45	5.04
polyp at pH7 6	18	16	2.98	9.27
coral polyp · control treatment	16	16	2.16	4.32
coral polyp · oil and dispersant treatment	16	15	1.11	4.68
coral polyp · oil treatment	16	16	2.20	4.18
coral polyp · dispersant treatment	16	15	2.07	3.90
Polyp	10	9	2.42	5.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.