Detailed information of OS493_020966-T1 in Lophelia pertusa

Genomic Location: scaffold_79:581222...590852
NR annotation: KAJ7390946.1, AP-2 complex subunit alpha-2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P18484AP-2 complex subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Ap2a2 PE=1 SV=3
P17427AP-2 complex subunit alpha-2 OS=Mus musculus OX=10090 GN=Ap2a2 PE=1 SV=2
Q0VCK5AP-2 complex subunit alpha-2 OS=Bos taurus OX=9913 GN=AP2A2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003821 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01602
all species →		Adaptin_NAdaptin N terminal regionRepeatInterproscan
PF02883
all species →		Alpha_adaptinC2Adaptin C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002553
all species →		DomainClathrin/coatomer adaptor, adaptin-like, N-terminalInterproscan
IPR050840
all species →		FamilyAdaptor Complexes Large SubunitInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR008152
all species →		DomainClathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomainInterproscan
IPR017107
all species →		FamilyAdaptor protein complex AP-1, gamma subunitInterproscan
IPR013041
all species →		Homologous_superfamilyClathrin adaptor, appendage, Ig-like subdomain superfamilyInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22780
all species →		ADAPTIN, ALPHA/GAMMA/EPSILONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0030117
all species →		Cellular Componentmembrane coatInterproscan
GO:0030122
all species →		Cellular ComponentAP-2 adaptor complexInterproscan
GO:0035615
all species →		Molecular Functionclathrin adaptor activityInterproscan
GO:0072583
all species →		Biological Processclathrin-dependent endocytosisInterproscan
GO:0140312
all species →		Molecular Functioncargo adaptor activityInterproscan
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0030121
all species →		Cellular ComponentAP-1 adaptor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_020966-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_020966-T1 global co-expression network
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