Gene detail

Detailed information of OS493_021002-T1 in Lophelia pertusa

Genomic Location: scaffold_79:907275...908660
NR annotation: KAJ7390982.1, TEL2, telomere maintenance protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T006	Telomere length regulation protein TEL2 homolog OS=Danio rerio OX=7955 GN=telo2 PE=2 SV=2
Q6GPP1	Telomere length regulation protein TEL2 homolog OS=Xenopus laevis OX=8355 GN=telo2 PE=2 SV=2
Q9DC40	Telomere length regulation protein TEL2 homolog OS=Mus musculus OX=10090 GN=Telo2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007513 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10193 all species →	Telomere_reg-2	Telomere length regulation protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019337 all species →	Domain	Telomere length regulation protein, conserved domain	Interproscan
IPR038528 all species →	Homologous_superfamily	TEL2, C-terminal domain superfamily	Interproscan
IPR051970 all species →	Family	Telomere Length Regulation TEL2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15830 all species →	TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007004 all species →	Biological Process	telomere maintenance via telomerase	Interproscan
GO:0042162 all species →	Molecular Function	telomeric DNA binding	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan
GO:0051879 all species →	Molecular Function	Hsp90 protein binding	Interproscan
GO:0070209 all species →	Cellular Component	obsolete ASTRA complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021002-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021002-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

16.3Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.69	3.56
polyp at pH7 6	18	18	3.18	7.17
coral polyp · control treatment	16	16	3.60	14.42
coral polyp · oil and dispersant treatment	16	16	2.50	16.35
coral polyp · oil treatment	16	16	2.52	3.71
coral polyp · dispersant treatment	16	16	1.14	2.65
Polyp	10	10	2.25	4.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.