Gene detail

Detailed information of OS493_021021-T1 in Lophelia pertusa

Genomic Location: scaffold_79:1029715...1031842
NR annotation: KAJ7391001.1, Lipoyltransferase 1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004707 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021021-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR004562 all species →	Family	Lipoyltransferase/lipoate-protein ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12561 all species →	LIPOATE-PROTEIN LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan
GO:0017118 all species →	Molecular Function	lipoyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021021-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021021-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

30.8Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.70	22.17
polyp at pH7 6	18	16	9.71	19.90
coral polyp · control treatment	16	16	4.91	14.28
coral polyp · oil and dispersant treatment	16	14	2.44	6.91
coral polyp · oil treatment	16	16	5.56	12.14
coral polyp · dispersant treatment	16	16	4.08	22.54
Polyp	10	9	14.28	30.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	30.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	27.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.