Gene detail

Detailed information of OS493_021030-T1 in Lophelia pertusa

Genomic Location: scaffold_79:1095954...1101402
NR annotation: KAJ7391010.1, hypothetical protein OS493_021030 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14008	Cytoskeleton-associated protein 5 OS=Homo sapiens OX=9606 GN=CKAP5 PE=1 SV=3
A2AGT5	Cytoskeleton-associated protein 5 OS=Mus musculus OX=10090 GN=Ckap5 PE=1 SV=1
Q9PT63	Cytoskeleton-associated protein 5-A OS=Xenopus laevis OX=8355 GN=ckap5-a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002782 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_021030-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045110 all species →	Family	XMAP215	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12609 all species →	MICROTUBULE ASSOCIATED PROTEIN XMAP215	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007051 all species →	Biological Process	spindle organization	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030951 all species →	Biological Process	establishment or maintenance of microtubule cytoskeleton polarity	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0046785 all species →	Biological Process	microtubule polymerization	Interproscan
GO:0051010 all species →	Molecular Function	microtubule plus-end binding	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0061863 all species →	Molecular Function	microtubule plus end polymerase	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021030-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021030-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

56.4Max TPM

28.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.09	40.75
polyp at pH7 6	18	18	25.50	41.55
coral polyp · control treatment	16	16	36.27	56.39
coral polyp · oil and dispersant treatment	16	16	35.10	44.75
coral polyp · oil treatment	16	16	33.24	42.00
coral polyp · dispersant treatment	16	16	24.37	41.63
Polyp	10	10	19.66	37.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.79
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.62
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	37.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.