Gene detail

Detailed information of OS493_021067-T1 in Lophelia pertusa

Genomic Location: scaffold_79:1363667...1367001
NR annotation: KAJ7391046.1, PIH1 domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZWY2	PIH1 domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=pih1d1 PE=2 SV=1
Q1RM55	PIH1 domain-containing protein 1 OS=Danio rerio OX=7955 GN=pih1d1 PE=2 SV=2
Q9NWS0	PIH1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=PIH1D1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006216 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08190 all species →	PIH1	PIH1 N-terminal domain	Domain	Interproscan
PF18201 all species →	PIH1_CS	PIH1 CS-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050734 all species →	Family	PIH1 family, Kintoun subfamily	Interproscan
IPR012981 all species →	Domain	PIH1, N-terminal	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR041442 all species →	Domain	PIH1D1/2/3, CS-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22997 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000492 all species →	Biological Process	box C/D snoRNP assembly	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0097255 all species →	Cellular Component	R2TP complex	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25426	PIH1D1; PIH1 domain-containing protein 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021067-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

10.2Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.86	5.99
polyp at pH7 6	18	17	3.90	5.28
coral polyp · control treatment	16	16	3.68	10.22
coral polyp · oil and dispersant treatment	16	16	2.78	5.02
coral polyp · oil treatment	16	16	4.16	6.35
coral polyp · dispersant treatment	16	16	2.13	4.79
Polyp	10	8	3.09	7.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.67
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.