Gene detail

Detailed information of OS493_021137-T1 in Lophelia pertusa

Genomic Location: scaffold_80:549056...556890
NR annotation: KAJ7384508.1, hypothetical protein OS493_021137 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90744	Alpha-N-acetylgalactosaminidase OS=Gallus gallus OX=9031 GN=NAGA PE=1 SV=1
P17050	Alpha-N-acetylgalactosaminidase OS=Homo sapiens OX=9606 GN=NAGA PE=1 SV=2
Q58DH9	Alpha-N-acetylgalactosaminidase OS=Bos taurus OX=9913 GN=NAGA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16499 all species →	Melibiase_2	Alpha galactosidase A	Family	Interproscan
PF17801 all species →	Melibiase_C	Alpha galactosidase C-terminal beta sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002241 all species →	Family	Glycoside hydrolase, family 27	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR041233 all species →	Domain	Alpha galactosidase, C-terminal beta sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11452 all species →	ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004557 all species →	Molecular Function	alpha-galactosidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01204	NAGA; alpha-N-acetylgalactosaminidase	EC:3.2.1.49	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021137-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

375.1Max TPM

120.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	78.45	105.19
polyp at pH7 6	18	18	83.08	112.34
coral polyp · control treatment	16	16	132.86	214.94
coral polyp · oil and dispersant treatment	16	16	208.97	375.08
coral polyp · oil treatment	16	16	120.90	214.98
coral polyp · dispersant treatment	16	16	128.52	234.78
Polyp	10	10	89.55	206.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	102.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.98
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.14
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	112.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	108.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.22
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.66
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.85
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	214.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	200.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	192.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	172.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	375.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	291.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	278.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	273.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	268.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	252.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	222.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	203.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	176.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	173.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	161.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	234.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	209.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	197.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	150.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	115.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	206.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	112.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	108.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	107.18
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	82.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	64.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	64.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	63.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	55.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	30.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.