Gene detail

Detailed information of OS493_021199-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1132522...1138955
NR annotation: KAJ7384568.1, hypothetical protein OS493_021199 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90744	Alpha-N-acetylgalactosaminidase OS=Gallus gallus OX=9031 GN=NAGA PE=1 SV=1
Q9QWR8	Alpha-N-acetylgalactosaminidase OS=Mus musculus OX=10090 GN=Naga PE=1 SV=2
P17050	Alpha-N-acetylgalactosaminidase OS=Homo sapiens OX=9606 GN=NAGA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16499 all species →	Melibiase_2	Alpha galactosidase A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR002241 all species →	Family	Glycoside hydrolase, family 27	Interproscan
IPR000111 all species →	Conserved_site	Glycoside hydrolase family 27/36, conserved site	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11452 all species →	ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004557 all species →	Molecular Function	alpha-galactosidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_021199-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021199-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

97.1Max TPM

27.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.85	30.02
polyp at pH7 6	18	17	12.72	31.33
coral polyp · control treatment	16	16	31.86	54.73
coral polyp · oil and dispersant treatment	16	16	55.65	97.07
coral polyp · oil treatment	16	16	36.56	77.79
coral polyp · dispersant treatment	16	16	19.67	44.27
Polyp	10	10	26.17	42.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.46
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.46
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.11
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.95
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	39.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	21.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.