Gene detail

Detailed information of OS493_021200-T1 in Lophelia pertusa

Genomic Location: scaffold_80:1140796...1147878
NR annotation: KAJ7384569.1, hypothetical protein OS493_021200 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90744	Alpha-N-acetylgalactosaminidase OS=Gallus gallus OX=9031 GN=NAGA PE=1 SV=1
Q66H12	Alpha-N-acetylgalactosaminidase OS=Rattus norvegicus OX=10116 GN=Naga PE=2 SV=1
Q9QWR8	Alpha-N-acetylgalactosaminidase OS=Mus musculus OX=10090 GN=Naga PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16499 all species →	Melibiase_2	Alpha galactosidase A	Family	Interproscan
PF17801 all species →	Melibiase_C	Alpha galactosidase C-terminal beta sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR002241 all species →	Family	Glycoside hydrolase, family 27	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR041233 all species →	Domain	Alpha galactosidase, C-terminal beta sandwich domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR000111 all species →	Conserved_site	Glycoside hydrolase family 27/36, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11452 all species →	ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004557 all species →	Molecular Function	alpha-galactosidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009311 all species →	Biological Process	oligosaccharide metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01204	NAGA; alpha-N-acetylgalactosaminidase	EC:3.2.1.49	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_021200-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.8Max TPM

20.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.27	26.82
polyp at pH7 6	18	18	22.85	30.36
coral polyp · control treatment	16	16	21.18	40.89
coral polyp · oil and dispersant treatment	16	16	25.28	33.87
coral polyp · oil treatment	16	16	21.89	31.88
coral polyp · dispersant treatment	16	16	12.88	27.43
Polyp	10	10	19.37	43.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.97
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.24
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.06
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	43.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.60
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.